Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs111522774 chr7:135135327 C/A 2.02E-9 492 30.77 32.4 3.03 KM Plot
PRAD rs1115640 chr12:14506689 G/T 0 494 20.93 33.37 30.55 KM Plot
PRAD rs111606710 chr5:179036036 T/C 0.00015 484 30.73 34.37 32.9 KM Plot
PRAD rs111637414 chr6:168131850 G/A 3.46E-8 481 31.27 28.07 35.58 KM Plot
PRAD rs11164896 chr1:93770334 A/C 3.74E-6 493 31.37 26.47 18.97 KM Plot
PRAD rs11164905 chr1:93790294 G/A 3.59E-6 494 31.37 26.8 18.97 KM Plot
PRAD rs11164939 chr1:93953301 C/T 5.52E-6 494 33.37 28.3 31.25 KM Plot
PRAD rs11164941 chr1:93971233 C/T 5.75E-6 490 31.3 28.22 33.37 KM Plot
PRAD rs111649851 chr11:129963781 G/A 7.9E-7 493 30.87 32.22 29.17 KM Plot
PRAD rs111679419 chr8:71608450 C/T 1.1E-9 476 31.27 28.63 24.27 KM Plot
PRAD rs111731634 chr2:204826426 TA/T 3.27E-5 491 30.87 31.63 20.33 KM Plot
PRAD rs111739263 chr6:43243151 G/T 1.27E-7 482 31.37 28.07 23.2 KM Plot
PRAD rs1117666 chr20:61706999 C/T 3.89E-6 488 31.13 28.42 20.93 KM Plot
PRAD rs111824792 chr4:187812100 A/G 2.17E-6 480 31.18 28.57 26.8 KM Plot
PRAD rs11186024 chr10:82313786 G/T 1.46E-6 491 31.3 27.27 20.18 KM Plot